About

Modified

May 11, 2026

Team

Dr. Arun Mitra Peddireddy

Asst Prof, Dept of CFM, AIIMS Bibinagar. Public health data science, spatial epidemiology, infectious disease modelling. Trained at LSHTM; member of the R Epidemics Consortium (RECon), Imperial College.

Prof. Biju Soman

Professor, Achutha Menon Centre for Health Science Studies (AMCHSS), SCTIMST Trivandrum. Lead architect of the AMCHSS COVID-19 Dashboard featured in Session 5.

Dr. Adrija Roy

Public health researcher and trainer. Workshop co-facilitator.

Acknowledgments

This workshop draws on teaching material and ideas shared by:

  • Sebastian Funk (LSHTM) — the Introduction to Infectious Disease Modelling course structure.
  • The Epiverse-TRACE community — the modern Indian / global infectious-disease modelling toolkit in R.
  • Allison Horst — open-licensed dplyr illustrations used in Session 2.
  • Federica Gazzelloni — the SIR animation idea (R-Ladies Rome 2023).
  • AMCHSS / SCTIMST Trivandrum — the live dashboard featured as the closing case study.

Third-party assets — attribution

Asset Source Licence
Allison Horst dplyr illustrations (images/tot_dplyr_*.png) github.com/allisonhorst CC-BY 4.0
Funk pathogen photos (images/funk/raw/slide_009_*.png) S. Funk, LSHTM IDM course Educational use, credit
COVID-19 case data (data/covid_india_daily.csv) JHU CSSE CC-BY 4.0
POLYMOD contact matrix socialmixr::polymod (R-Universe) CC-BY 4.0
outbreaks::ebola_sim_clean$linelist outbreaks R package MIT
codefrag Quarto extension mcanouil/quarto-revealjs-codefrag MIT

Licence

  • Code in this repository (*.R, *.qmd, _quarto.yml, prep scripts) — MIT License.
  • Slide content, prose, and original images — CC-BY-SA 4.0. Reuse freely with attribution.
  • Third-party assets retain their original licences — see the table above.

Contact

For questions, errors, or to contribute back, open an issue on GitHub or email Dr. Arun Mitra Peddireddy.

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